PHOSPHATE SOLUBILIZING BACTERIA FROM THE SOIL: ISOLATION IDENTIFICATION AND CHARACTERIZATION

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ABSTRACT

Different strains of phosphate-solubilizing bacteria (PSB) were isolated from the rhizosphere of different plants of different agricultural lands located at Afugiri Ohuhu community Umuahia and Uzuakoli rice plantation. The objective of the study was to explore the capabilities of PSB and evaluate their efficiency to enhance growth of maize plants under various condition. The soil samples were collected from the rhizosphere of plants at a depth of 6-15cm from the top soil. The purified isolates were identified as Bordetella bronchiseptica, Bacillus thuringiensis and Bacillus cereus respectively based on the characteristic morphological, biochemical behavior and 16SrRNA sequencing. The efficiency of different PSB isolates for phosphate solubilization was evaluated from the zones they formed on agar plates of Pickovaskaya growth medium (agar) by solubilizing the tricalcium phosphate of the medium. The results showed that B. cereus with a phosphate solubilization index of 2.3 was the strongest phosphate solubilizer and maize plant simulated with B. cereus inoculant performed better. There was relative increase in plant height, number of leaves, root length and grain yield in plants inoculated with PSM than in uninoculated plants (control).  for all the tested parameters. The results of this greenhouse evaluation are encouraging and need to be confirmed under field condition in combination with organic and chemical fertilizers. 




TABLE OF CONTENTS

Title Page                                                                                                                              i

Certification                                                                                                                          ii

Declaration                                                                                                                           iii

Acknowledgement                                                                                                               iv

Table of Contents                                                                                                                 v

List of Tables                                                                                                                        vi

List of Figures                                                                                                                      vii

Abstract                                                                                                                                viii

 

CHAPTER 1:  INTRODUCTION

1.1      Problem Statement                                                                                                    4

1.2      Justification of the Research                                                                                     5

1.3      General Objective                                                                                                      5

1.4      Specific Objectives                                                                                                    5

 

CHAPTER 2: LITERATURE REVIEW

2.1     Phosphate Solubilization by Microbes                                                                        6

2.2     Biodiversity of Phosphorus Solubilizers                                                                     9

2. 3    Mechanism of P-solubilization by PSB                                                                      11

2.4     Constraints in using Phosphate Fertilizers                                                                  17

2.5     Phosphate Solubilization by Microbes                                                                        18

2.6     Mineralization: Enzymatic Degradation of Complex                                                

          Organic Phosphate Compounds                                                                                 20

2.7     Role of Exopolysaccharides in P Solubilization                                                         22

2.8     Role of Exopolysaccharides in P Solubilization                                                         24

2.9     Plant Growth Promoting Attributes of Phosphate Solubilizing Bacteria                   24

  2.10     Genetic engineering of PSM                                                                                     25


CHAPTER 3:  MATERIALS AND METHODS

3.1        Sample Collection                                                                                                    27

3.2        Preparation of Medium                                                                                            27

3.3        Isolation of Phosphate Solubilizing Bacteria                                                           27

3.4        Morphological Characterization                                                                              28

3.5        Analysis of Phosphate Solubilizing Bacterial Isolates                                             28

3.6        Optimization of Physiological Conditions (Temperature and pH)                          28

3.7        Gram Staining                                                                                                          29

3.8        Biochemical Characterization                                                                                  29

3.9       Application of PSB and its Effect on the Growth Rate of Maize Plant                  33

3.10      Molecular characterization                                                                                       33

 

CHAPTER 4:  RESULTS AND DISCUSSION

4.1     Morphological and Biochemical Characteristics of Phosphate Solubilizing

Bacteria from Soil                                                                                                       36

4.2     Phosphate Solubilizing Activities of Selected Isolates                                               37

4.3     Attributes of the PSB Isolates                                                                                    48

4.4     Discussion                                                                                                                   51

 

CHAPTER 5: CONCLUSIONS AND RECOMMENDATIONS

5.1     Conclusion                                                                                                                  54

5.2     Recommendations                                                                                                      54

          References                                                                                                                  55


 





LIST OF TABLES


4.1:  Morphological and biochemical characteristics of bacterial isolates from loamy soil.    37

4.2:  Phosphate Solubilizing Activities of selected isolates                                                    38

4.3:   Week one performance of maize inoculated with phosphate solubilizing bacteria       42

4.4:   Week three performance of maize inoculated with phosphate solubilizing bacteria     42

4.5:   Week five performance of maize inoculated with phosphate solubilizing bacteria       43

4.6:   Week 7 performance of maize inoculated with phosphate solubilizing bacteria           44

4.7:    Week 10 performance of maize inoculated with phosphate solubilizing bacteria        45

4.8:  Yield Assessment of the Maize Plant With Phosphate Solubilizing Bacteria.               46

 

 

 

 

LIST OF FIGURES


1.0              An illustration depicting functional diversity among phosphate solubilizing

bacteria                                                             21

2.0              Schematic representation of mechanism of soil p solubilization /mineralization

and mobilization of PSB                                                                                             23

3.0       Effect of pH on phosphate solubilization                                                                   39

4.0       Effect of temperature on phosphate solubilization                                                     40

 

5.0       Agarose electrophoresis of the amplified 16SrRNA gene of the

 bacterial isolates                                                                                                         41

6.0     Phylogenetic tree showing the relationship between the organisms                            49

 

 

 

 

      

 

CHAPTER 1

INTRODUCTION


Phosphorus (P) is a major growth-limiting nutrient, and unlike the case for nitrogen, there is no large atmospheric source that can be made biologically available for root development, stalk and stem strength, flower and seed formation, crop maturity and production, N-fixation in legumes, crop quality, and resistance to plant diseases are the attributes associated with phosphorus nutrition (Ahmad et al., 2009). However, a greater part of soil phosphorous, approximately 95-99% is present in the form of insoluble phosphates and hence cannot be utilized   by the plants Phosphorus plays an indispensable biochemical role in photosynthesis, respiration, energy storage and transfer, cell division, cell enlargement and several other processes in the living plant. It helps plants to survive winter rigors and also contributes to disease resistance in some plants (Amin et al., 2012). P availability is low in soils because of its fixation as insoluble phosphates of iron, aluminum and calcium. Since deficiency of P is the most important chemical factor restricting plant growth, chemical phosphate fertilizers are widely used to achieve optimum yields. Soluble forms of P fertilizer used are easily precipitated as insoluble forms, this leads to excessive and repeated application of P fertilizer to cropland.  Phosphorus is a plant macronutrient that plays a significant role in plant metabolism, ultimately reflected on crop yields. It is important for the functioning of key enzymes that regulate the metabolic pathways.  The uptake of phosphorus by the plant is only a small fraction of what is actually added as phosphate fertilizer. Phosphorus deficiency is widespread and phosphorus fertilizers are required to maintain crop production. When it is added to the soil in the form of phosphate fertilizer, only a small portion is utilized by plants.

Phosphate fertilizers can also be used to immobilize heavy metals in soil. Insoluble phosphate compounds can be solubilize by organic acids and phosphatase enzymes produced by plants and microorganisms. Application of biological fertilizers such as biological phosphate fertilizers improves soil fertility. Phosphorus can naturally be found in diverse forms in the soil solution. The roots take up several forms of phosphorus, out of which the greatest part is absorbed in the forms of H2PO4 and HPO4 2- depending upon soil pH. The degree of fixation and precipitation of phosphorus in soil is highly dependent upon the soil conditions such as pH, moisture content, temperature and the minerals already present in the soil.  

Some bacterial species have mineralization and solubilization potential for organic and inorganic phosphorus, respectively. Phosphate solubilizing activity is determined by the ability of microbes to release metabolites such as organic acids, which through their hydroxyl and carboxyl groups chelate the cation bound to phosphate, the latter being converted to soluble forms. Phosphate solubilization takes place through various microbial processes or mechanisms including organic acid production and proton extrusion. A wide range of microbial P solubilization mechanisms exist in nature and much of the global cycling of insoluble organic and inorganic soil phosphates is attributed to bacteria and fungi (Ahmad et al., 2009). Phosphobacteria have been found to produce some organic acids such as monocarboxylic acid (acetic, formic), monocarboxylic hydroxy (lactic, glucenic, glycolic), monocarboxylic, ketoglucenic, decarboxylic (oxalic, succinic), dicarboxylic hydroxy (malic, maleic) and tricarboxylic hydroxy (citric) acids in order to solubilize inorganic phosphate compounds. 

 

A diverse group of soil micro flora was reported to be involved in solubilizing insoluble phosphorous complexes enabling plants to easily absorb phosphorous. Several fungal and bacterial species, popularly called as phosphate solubilizing microorganisms, (PSMs) assist plants in mobilization of insoluble forms of phosphate. PSMs include different groups of microorganisms, which not only assimilate phosphorus from insoluble forms of phosphates, but they also cause a large portion of soluble phosphates to be released in quantities in excess of their requirements. Species of Aspergillus and Penicillium are among fungal isolates identified to have phosphate solubilizing capabilities.

Several reports have examined the ability of different bacterial species to solubilize insoluble inorganic phosphate compounds, such as tricalcium phosphate, dicalcium phosphate, hydroxyapatite, and rock phosphate. Among the bacterial genera with this capacity are Pseudomonas, Bacillus, Rhizobium, Burkholderia, Achromobacter, Agrobacterium, Microccocus, Aereobacter, Flavobacterium and Erwinia. There are considerable populations of phosphate solubilizing bacteria in soil and in plant rhizosphere.   The soils that exhibit highest P fixation capacity occupy 1,018 million hectares (ha) in the tropics (Sanchez and Logan, 1992). It is for this reason that soil P becomes fixed and available P levels have to be supplemented on most agricultural soils by adding chemical P fertilizers, which not only represent a major cost of agricultural production but also impose adverse environmental impacts on overall soil health and degradation of terrestrial, freshwater and marine resources . Thus, increased P levels have been identified as a main factor for eutrophication of surface waters that may lead to algal blooms. The repeated and injudicious applications of chemical P fertilizers, leads to the loss of soil fertility by disturbing microbial diversity, and consequently reducing yield of crops. The long-term effect of different sources of phosphate fertilizers on microbial activities includes inhibition of substrate-induced respiration by streptomycin sulphate (fungal activity) and actidione (bacterial activity) and microbial biomass carbon (C) (Bolan et al., 1996). Similarly, the application of triple superphosphate (94 kg/ ha) has shown a substantial reduction in microbial respiration and metabolic quotient (qCO2) (Chandini and Dennis, 2002).

Moreover, the efficiency of applied P fertilizers in chemical form rarely exceeds 30% due to its fixation, either in the form of iron/aluminum phosphate in acidic soils or in the form of calcium phosphate in neutral to alkaline soils. It has been suggested that the accumulated P in agricultural soils would be sufficient to sustain maximum crop yields worldwide for about 100 years if it were available (Khan et al., 2009). A major characteristic of P biogeochemistry is that only 1% of the total soil P (4004,000 kg P/ ha in the top 30 cm) is incorporated into living plant biomass during each growing season (1030 kg P/ha), reflecting its low availability for plant uptake (Quiquampoix and Mousain, 2005). Furthermore, P is a finite resource and based on its current rate of use, it has been estimated that the worlds known reserves of high-quality rock P may be depleted within the current century (Cordell et al., 2009). Beyond this time the production of P based fertilizers will require the processing of lower grade rock at significantly higher cost (Isherwood, 2000). The realization of all these potential problems associated with chemical P fertilizers together with the enormous cost involved in their manufacture, has led to the search for environmental compatible and economically feasible alternative strategies for improving crop production in low or P-deficient soils .The use of microbial inoculants (biofertilizers) possessing P-solubilizing activities in agricultural soils is considered as an environmental-friendly alternative to further applications of chemical based P fertilizers.

 

1.1       PROBLEM STATEMENT

Most agricultural soils contain large reserves of phosphorus ,a considerable part of which has accumulated as a consequence of regular application of  phosphorus  fertilizers .However, a large portion of soluble inorganic phosphate applied to soil as chemical fertilizers is rapidly immobilized soon after application and becomes unavailable to plants there by leading to low crop yield. Chemical fertilizers are not environmentally friendly and are cost effective.                          

This work therefore seeks to identify those microorganisms in the soil capable of solubilizing the immobilized insoluble phosphates in the soil thereby making them available for plants. These microbial inoculants would provide an effective, environmentally friendly and alternative to further application of chemical based phosphorus fertilizers.

 

1.2        JUSTIFICATION OF THE RESEARCH

This research   was based on the recognition of the increasing deficiency of phosphorus in the soil and the urgent need of providing an eco-friendly alternative to fixing phosphorus in the soil as an alternative to chemical fertilizers. The diversities of microorganisms in its activities-provide the needed alternative eco-friendly means of making phosphorus available for plants’ use. The capacity to properly address the world wide incidence of soil phosphorus deficiency and increased application of chemical fertilizers lies in the ability to identify those microorganisms with the ability to solubilize soluble soil phosphate making them available to plants.

 

1.3      GENERAL OBJECTIVE

To develop microbial inoculants possessing phosphate solubilizing abilities in agricultural                              soils as an environmentally friendly alternative to further applications of chemical based phosphorus   fertilizer.


1.4      SPECIFIC OBJECTIVES

1. screening, isolation and characterization of phosphate solubilizing bacteria from the soil.

2. Molecular characterization of the isolated phosphate solubilizing bacteria using 16S rRNA

3. Optimization of growth conditions of isolated phosphate solubilizing bacteria

4.  Analysis of Phosphate Solubilizing Activity of the isolates

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