ANTITRYPANOSOMAL ACTIVITIES OF ACACIA NILOTICA AND KHAYA SENEGALENSIS AND THE HAEMATOLOGICAL PROFILE OF TRYPANOSOMA BRUCEI BRUCEI INFECTED WISTAR RATS

  • 0 Review(s)

Product Category: Projects

Product Code: 00001488

No of Pages: 95

No of Chapters: 6

File Format: Microsoft Word

Price :

₦5000

  • $

ABSTRACT

 

This study was aimed at investigating antitrypanosomal activities and haematological profile of crude extract and fractions of the stem bark of Acacia nilotica and Khaya senegalensis plants against Trypanosoma brucei brucei infected Wistar rats with a view to determining the phytochemical constituents and LD50 of Acacia nilotica and Khaya senegalensis, antitrypanosomal activities of crude extract of Acacia nilotica and Khaya senegalensis against Trypanosoma brucei brucei infected Wistar rats, antitrypanosomal activities of the plant fractions administered to Trypanosoma brucei brucei infected Wistar rats and haematological profile of Trypanosoma brucei brucei infected Wistar rats, before and after administration of crude extract and fractions. The phytochemical constituents and toxicity of the stem bark of both plants were determined by the standard method and the LD50respectively. The methanolic extracts and fractions of the plants was administered to the Wistar rats intraperitoneally daily and the parasitaemia count was determined using the rapid matching method. PCV, WBC and differential counts were determined before and after the administration to ascertain any significant differences. The phytochemical constituents of the stem barks of Acacia nilotica and Khaya senegalensis crude extracts and fractions revealed the following secondary metabolites; Alkaloids, tannins, glycosides, cardiac glycosides, saponins, triterpene, carbohydrates and flavonoids. The LD50 for the crude extract of the stem bark of Acacia nilotica was 707.1mg/kg body weight while the LD50 for the fractions (N-hexane, ethyl acetate and N-butane) was 547.7 mg/kg, 387.3 mg/kg and 707.1 mg/kg body weight respectively. The LD50 for the crude extract of the stem bark of Khaya senegalensis was 547.7mg/kg body weight while the LD50 for the fractions (N-hexane, ethyl acetate and N-butane) was 387.3 mg/kg, 547.7 mg/kg and 223.6 mg/kg body weight respectively. The stem barks of Acacia nilotica and Khaya senegalensis crude extracts (100, 200, 300 and 400mg/kg body weight) and fractions (50, 100, 150 and 200mg/kg body weight) had antitrypanosomal activity. Parasites were cleared from circulation within 12 days of treatment. Haematological indices of Acacia nilotica and Khaya senegalensis in Trypanosoma brucei brucei infected Wistar rats showed that there was no statistical significant change in the packed cell volume, white blood cells and differential counts before and after treatment with all doses of the crude extracts and fractions. The findings in this study provide very useful source for biopharmaceutical industries for the development of antitrypanosomal agents from the stem bark of Acacia nilotica and Khaya senegalensis for therapeutic intervention in the control of African trypanosomiasis. There is need for further extensive work on these plants using different Trypanosoma species in the management of African trypanosomiasis.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


TABLE OF CONTENTS

 

Title Page………………………………………………………………………………………i

 

Declaration…………………………………………………………………………………….ii

 

Certification…………………………………………………………………………………..iii

 

Dedication…………………………………………………………………………………….iv

 

Acknowledgement……………………………………………………………………………..v

 

Abstract……………………………………………………………………………………….vi

 

Table of Contents……………………………………………………………………………viii

 

List of Figures………………………………………………………………………………..xii

 

List of Tables………………………………………………………………………………..xiii

 

List of Plates………………………………………………………………………………….xv

 

List of Appendices…………………………………………………………………………..xvi

 

List of Abbreviations……………………………………………………………………….xvii

 

 

 

 

CHAPTER ONE

 

1.0         INTRODUCTION……………………………………………………………………1

 

1.1         Statements of the Research Problem…………………..……………………………3

 

1.2         Justification…………………………………………………………………………...4

 

1.3         Aim…………………………………………………………………………………….5

 

1.4         Objectives……………………………………………………………………………..5

 

 

 

 

CHAPTER TWO

 

2.0         LITERATURE REVIEW……………………………………………………………6

 

2.1         The Parasite: Trypanosoma brucei…………………………………………………..6

 

 

 

 

 

 

viii


2.2         The vector: Glossina spp.……………………………………………………………9

 

2.3         Infection and Symptoms of Trypanosomiasis……………………………………..12

 

2.4         Disease Management………………………………………………………………..12

 

2.5         Treatment……………………………………………………………………………13

 

2.6         Epidemiology and Control………………………………………………………….16

 

2.7         Taxonomic Classification of Acacia nilotica……………………………………….16

 

2.7.1     Plant description……………………………………………………………………...18

 

2.7.2     Traditional claims…………………………………………………………………….20

 

2.7.3    Medicinal uses of different parts of Acacia nilotica…………………………………20

 

2.8         Taxonomic Classification of Khaya senegalensis………………………………….21

 

2.8.1     Plant description……………………………………………………………………...23

 

2.8.2     Medicinal uses………………………………………………………………………..25

 

 

 

 

CHAPTER THREE

 

3.0         MATERIALS AND METHODS…………………………………………………...27

 

3.1         Collection and Authentication of Plant Materials………………………………...27

 

3.2         Preliminary Processing and Preparation of Plant Materials…………………….27

 

3.3         Preparation of Crude Plants Extracts……………………………………………..27

 

3.4        Preparation of Plant Fractions using Partitioning Fractionation (Solvent-Solvent Extraction)………………………………………………………..27

 

3.5         Experimental Animals……………………………………………………………...28

 

3.6         Trypanosome Stock…………………………………………………………………28

 

3.7         Phytochemical Screening of Plant Extracts……………………………………….28

 

3.7.1.    Detection of alkaloids………………………………………………………………...28

 

3.7.2.    Detection of tannins………………………………………………………………….29

 

3.7.3.    Detection of glycosides………………………………………………………………29

 

ix


3.7.4.    Detection of cardiac glycosides………………………………………………………29

 

3.7.5.    Detection of saponins………………………………………………………………...30

 

3.7.6.    Detection of steroids………………………………………………………………….30

 

3.7.7.    Detection of triterpenes………………………………………………………………30

 

3.7.8.   Detection of carbohydrates…………………………………………………………...30

 

3.7.9.    Detection of flavonoids………………………………………………………………30

 

3.7.10. Detection of anthraquinones………………………………………………………….31

 

3.8.       Determination of LD50………………………………………………………………31

 

3.9.       Determination of Antitrypanosomal Activities of the Crude Extract…………...32

 

3.10.    Determination of the Antitrypanosomal Activities of the Plant Fractions using Partitioning Fractionation (Solvent-Solvent extraction)…………………………33

 

3.11.    Determination of Haematological Profile………………………………………….33

 

3.11.1. Packed Cell Volume (PCV)………………………………………………………….33

 

3.11.2. White blood cell (WBC)……………………………………………………………..34

 

3.11.3. Differential count…………………………………………………………………….34

 

 

 

 

CHAPTER FOUR

 

4.0         RESULTS……………………………………………………………………………35

 

4.1         Phytochemical Constituents of Crude and Fractions of Acacia nilotica

 

(stem bark)and Khaya senegalensis (stem bark)………………………………...35

 

4.2         LD50 Crude and Fraction Extracts Analysis of Acacia nilotica and

 

Khaya senegalensis…………………………………………………………………..39

 

4.3         Antitrypanosomal activities of crude extract and fractions of Acacia nilotica and Khaya senegalensis against Trypanosoma brucei brucei infected Wistar rats.......39

 

 

 

 

 

 

 

 

 

 

 

x


 

 

CHAPTER FIVE

 

5.0         DISCUSSION……………………………………………………………………….66

 

5.1         Phytochemical Constituents of the Crude Extract and Fraction of the

 

Stem Bark of Acacia nilotica and Khaya senegalensis…………………………….66

 

5.2         The LD50 of the Crude Extract and Fraction of the Stem Bark of

 

Acacia nilotica and Khaya senegalensis against Adult Wistar rats………………67

 

5.3         The Antitrypanosomal activity of the Crude Extract and Fraction of the Stem Bark of Acacia nilotica and Khaya senegalensis against

 

Trypanosoma brucei brucei infected Wistar rats…………………………………..67

 

5.4         The Haematological profile for the Trypanosoma brucei brucei infected Wistar before and after crude extract and fraction of stem bark of

 

Acacia nilotica and Khaya senegalensis administration…………………………..69

 

 

 

 

CHAPTER SIX

 

6.0         CONCLUSION AND RECOMMENDATIONS………………………………….71

 

6.1         Conclusion…………………………………………………………………………...71

 

6.2         Recommendations…………………………………………………………………..72

 

6.3         Contribution to Knowledge………………………………………………………...72

 

 

REFERENCES……………………………………………………………………………...73

 

APPENDICES………………………………………………………………………………80

 

 

 

 

 

 

 

 

 

 

 

xi


 

LIST OF FIGURES

 

Figure

Title

Page

2.1

The life cycle of Trypanosoma brucei brucei……………………………….................8

2.2

Approved Drugs for First and Second Stage of Human African Trypanosomiasis…..15

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

xii


 

LIST OF TABLES

 

Table

Title

Page

2.1

Taxonomic classification of Acacia nilotica…………………………………………17

2.2

Taxonomic classification of Khaya senegalensis…………..………………………...22

4.1

Phytochemical Constituents of Crude Extracts of the Stem bark of

 

 

Acacia nilotica and Khaya senegalensis……………………………………………..36

4.2

Phytochemical Constituents of Fractions (N-hexane, Ethylacetate and N-butane)

 

of Stem Bark of Acacia nilotica and Khaya senegalensis…………………………...37

4.3

Physical Characteristics of the Extracts of the Stem Bark of

 

 

Acacia nilotica and Khaya senegalensis……………………………………………..38

4.4

LD50 of crude extract of Acacia nilotica…………………………………………......40

4.5

LD50 of N-hexane fraction of Acacia nilotica………………………………………..41

4.6

LD50 of ethyl acetate fraction of Acacia nilotica……………………………………..42

4.7

LD50 of N-butane fraction of Acacia nilotica………………………………………...43

4.8

LD50 of crude extract of Khaya senegalensis…………………………………….......44

4.9

LD50 of N-hexane fraction of Khaya senegalensis…………………………………...45

4.10

LD50 of Ethyl acetate fraction of Khaya senegalensis……………………………......46

4.11

LD50 of N-butane fraction of Khaya senegalensis…………………………………...47

4.12

Antitrypanosomal activity Acacia nilotica (Crude Extract) on Parasite Count

 

in Wistar Rats infected with Trypanosoma brucei brucei……………………………48

4.13

Antitrypanosomal activity of Khaya senegelensis (Crude Extract) on Parasite

 

Count in Wistar Rats infected with Trypanosoma brucei brucei…………………….49

4.14

Effect of Administration of Stem Bark Crude Extract of

 

 

Acacia niloticaon Haematological Indices of Wistar Rats…………………………...50

4.15

Effect of Administration of Stem Bark Crude Extract of

 

 

Khaya senegalensison Haematological Indices of Wistar Rats……………………...52

4.16

Antitrypanosomal activity Acacia nilotica (N-hexane fraction) on Parasite

 

 

Count in Wistar Rats infected with Trypanosoma brucei brucei…………………….53

4.17

Antitrypanosomal activity of Acacia nilotica (Ethylacetate) on Parasite Count in

 

Wistar Rats…………………………………………………………………………...54

4.18

Antitrypanosomal activity Acacia nilotica (N-butane fraction) on Parasite Count

 

in Wistar Rats infected with Trypanosoma brucei brucei……………………………55

 

 

xiii


4.19      Antitrypanosomal activity t of Khaya senegelensis (N-hexane fraction) on

 

Parasite Count in Wistar Rats infected with Trypanosoma brucei brucei……...……56

 

4.20      Antitrypanosomal activity of Khaya senegelensis (Ethylacetate fraction) on

 

Parasite Count in Wistar Rats infected with Trypanosoma brucei brucei…………...57

 

4.21    Antitrypanosomal activity of Khaya senegelensis (N-butane fraction) on

 

Parasite Count in Wistar Rats infected with Trypanosoma brucei brucei…………...59

 

4.22      Effect of Administration of Stem Bark Extract of Acacia nilotica N-hexane

 

fraction on Haematological Indices of Wistar Rats………………………………….60

 

4.23      Effect of Administration of Stem Bark Extract of Acacia nilotica Ethylacetate fraction on Haematological Indices of Wistar Rats……………………………….....61

 

4.24      Effect of Administration of Stem Bark Extract of Acacia nilotica N-butane

 

fraction on Haematological Indices of Wistar Rats………………………………….62

 

4.25      Effect of Administration of Stem Bark Extract of Khaya senegalensis

 

N-hexane fraction on Haematological Indices of Wistar Rats……………………….63

 

4.26      Effect of Administration of Stem Bark Extract of Khaya senegalensis

 

Ethylacetate fraction on Haematological Indices of Wistar Rats…………………….64

 

4.27      Effect of Administration of Stem Bark Extract of Khaya senegalensis N-butane fraction on Haematological Indices of Wistar Rats………………………………….65

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

xiv


LIST OF PLATES

 

 

Plate                                                                                     Title                                                                                    Page

 

 

I                     Photogragh of Tsetsefly……………………………………………………...............11

 

II            The stem bark, root, seeds and leaves of Acacia nilotica…………………………….19

 

III          The stem bark, flower, fruit, leaves and seeds of Khaya senegalensis……................24

 

 

 

 

 

 

 

 

 

 

 

xv


LIST OF APPENDICES

 

 

Appendix                                                                          Title                                                                                    Page

 

 

I                     Photograph of Trypanosoma brucei brucei in blood film of Wistar Rats………….80

 

II            Baseline for Haematology and Chemistry values for Charles River Wistar Rats.....81

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

xvi


LIST OF ABBREVIATIONS


 

 

AAT

 

 

WHO

 

 

HAT

 

 

VSG

 

 

NITR

 

 

PBS

 

 

PCV

 

 

rpm

 

 

WBC

 

 

bw

 

 

IUCN

 

 

TDR

 

 

OECD


 

-African Animal Trypanosomosis

 

 

-World Health Organization

 

 

-Human African Trypanosomiasis

 

 

-Variant Surface Glycoprotein

 

 

-Nigerian Institute for Trypanosomiasis Research

 

 

-Phosphate Buffered Solution

 

 

-Packed Cell Volume

 

 

-Revolution per minute

 

 

-White blood cell

 

 

-Body weight

 

 

-International Union for Conservation of Nature and Natural Resources

 

 

Tropical Disease Research

 

 

Organistion for Economic Cooperation and Development


 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

xvii


 

CHAPTER ONE

 

 

1.0                                                                         INTRODUCTION

 

African Trypanosomiasis (African sleeping sickness) is caused by trypanosomes which is found in Sub-Saharan Africa and is threatening more than sixty million lives on daily basis (Abdullahi and Emmanuel, 2012). Trypanosomes are protozoan parasites in the family Trypanosomatidae. Most trypanosomes are transmitted by the vector, tsetse flies (Glossinia spp) which are found only in Sub-Saharan Africa, between latitudes 14o N and 20o S (Bernard and Alain, 2012). The parasites include Trypanosoma brucei gambiense and Trypanosoma brucei rhodesiense, (cause Human African Trypanosomiasis). Other trypanosomes primarily affect animals include Trypanosoma congolense, Trypanosoma vivax, Trypanosoma brucei brucei, Trypanosoma simiae and Trypanosoma godfreyi (Bernard and Alain, 2012).

 

Nigeria‟s natural habitation is made up of both savannah and tropical rainforest, which falls within the endemic area in Africa i.e. between latitude 150Nand 290 S. The diverse flora offers a wide spectrum of unique medicinal plants. There are varieties of studies of Nigerian plants used in the traditional management of trypanosomiasis, indicating significant anti-trypanosomal activity (in-vitro/in-vivo); some of which the metabolites responsible have been isolated and reported (Atawodi et al, 2003).

 

Trypanosoma brucei brucei are unicellular parasites transmitted by the tsetse fly. They are the causative agent of African animal trypanosomosis (AAT), also known as Nagana. Trypanosoma brucei brucei is the etiological agent for sleeping sickness which is one of the most serious protozoan diseases in Africa (Antia et al., 2009; Simarro et al., 2011).

 

 

 

 

 

1


 

The disease results in acute, sub acute or chronic disease characterized by intermittent fever, anaemia, occassional diarrhoea, rapid loss of consciousness and often terminates in death (Olukunle et al., 2010). On the basis of mortality, Human African Trypanosomiasis is ranked ninth among 25 infectious diseases in Africa (Bernard and Alain, 2012).

 

The current chemotherapy of the human trypanosomiasis relies on six drugs namely; Suramin, Pentamidine, Melarsoprol, Eflorinithine, Arsobal and Mel B, five of which were developed over 30 years ago (Steverding and Tyler, 2005). All of the current therapies are unsatisfactory for various reasons, including unacceptable toxicity, poor efficacy, undesirable route of administration, drug resistance and high cost (Fairlamb, 2003). Natural products derived from plants offer novel possibilities to obtain new drugs that are active against trypanosomes (Hoet et al., 2004). The local use of natural plants as primary health remedies is due to their pharmacological properties. Many plant extracts owe their potency to the presence of metabolites. These metabolites are usually found in various parts of the plants like roots, leaves, shoots and barks. Many plants have therefore become sources of important drugs and as such the pharmaceutical industries have exploited medicinal plants as a source of bioactive agents that can be used in the preparation of synthetic medicine (Kinghorn, 1994).

 

Acacia nilotica belongs to the family Leguminosae. It is called „Bagaruwa‟ in Hausa, „Gaude‟ in Fulfulde and „Kangar‟ in Kanuri. It is commonly found in Guinea and Sudan savannah. Ethanol extract of the leaves have been reported to have anticancer and antioxidant activity (Kalaivani et al., 2010). The plant parts are commonly used, particularly in the Northern and South-Western Nigeria, as broad spectrum antimicrobials, especially in the treatment of dysentery. Khaya senegalensis is a tree in the Meliaceae family. It is widely distributed in the Sub-Saharan savannah. It is called “madachi” in Hausa, “dalechi” in Fulani, “ogonwo” in Yoruba and “ono” in Igbo.

2


 

The bark is dark-grey to grey-brown. It is used for carpentry and construction. The bark is used for a variety of medical purposes such as malaria, stomach complaints and headaches. It is applied externally to skin rashes, wounds or any abnormality (Keay et al., 1989).

 

1.1.        Statement of the Research Problem

 

Trypanosomiasis, a disease of major importance in human and animals has continued to threaten human health and economical development (Kuzoe, 1993; WHO, 2014). The population at risk being about 69 million with one third of this number being at a „very high‟ to „moderate‟ risk and the remaining two thirds at a „low‟ to „very low‟ risk (WHO, 2014).

 

Trypanosomiasis is one of the most severe medical problems in Africa, infecting around 50,000 people every year (Ohaeri, 2010), and also affects 50-70 million animals (Ogbadoyi et al., 2007). Trypanosomiasis affects millions of people in Sub-Saharan Africa and is responsible for the death of about half a million patients per year (Barrett, 1999; WHO, 2014).

 

Anaemia is the most outstanding clinical and laboratory feature of African trypanosomiasis and also the primary cause of death (Bizimana et al., 2006).

 

Chemotherapy is the most widely used means of controlling the trypanosomiasis. The few registered trypanocides are often associated with severe side effects and required lengthly parenteral administration, lack efficacy and are unaffordable for most of the patients (Legros et al., 2002). Chemotherapy and chemoprophylaxis, which form the most important aspect of control and eradication of trypanosomiasis in African countries, are beset with problems. These include limited repertoire of compounds, resistance to drugs, drug toxicity and protracted treatment protocols (TDR, 1984). Poor clinical

 

3


 

efficiency, drug resistance and toxicity are some of the limitations facing programmes targeted at controlling the disease (Onyeyili and Egwu, 1995; Geerts and Holmes, 1998; Legros et al., 2000; Kamuanga, 2003).

 

Previous studies have shown that the crude extracts of Acacia nilotica and Khaya senegalensis have antitrypanosomal effects (antitypanocidal or antitrypanostatic). The subject of this study is to show that fractions of these plant extracts could exhibit different and indeed more effective results.

 

1.2.        Justification

 

The high costs and toxicity of synthetic drugs have stimulated renewed interest in plant substitutes. With the emergence of drug resistant trypanosomes, cost-effective new drugs in the treatment of sleeping sickness are required.

 

Medicinal plants are less expensive and less hazardous to the health than their synthetic counterpart hence medicinal plants with anti-trypanosomal properties have paramount importance for the treatment of trypanosomiasis.

 

It has been known that plant products play an important role in certain disease control; for example Hoet et al., (2004), stated that natural products derived from plants offer novel possibilities to obtain new drugs that are active against trypanosomes.

 

Chemotherapy is the most widely used means of controlling the trypanosomiasis. The few registered trypanocides are often associated with severe side effects (Guttering, 1985) and require lengthy parenteral administration, lack efficacy and are unaffordable for most of the patients (Legros et al., 2002). Thus there is the urgent need to source for new, cheap effective non hazardous plants products that can help control trypanosomiasis.

 

 

 

 

 


1.3.        Aim

 

The aim of this study was to investigate the anti-trypanosomal activity of Acacia nilotica and Khaya senegalensis and the haematological profile of Trypanosoma brucei brucei infected Wistar rats.

 

1.4.        Objectives

 

The specific objectives were to determine:

 

1.      The phytochemical constituents and LD50 of Acacia nilotica and Khaya senegalensis.

 

2.      The antitrypanosomal activities of crude extract of Acacia nilotica and Khaya senegalensis against Trypanosoma brucei brucei infected Wistar rats.

 

3.      The antitrypanosomal activities of the plant fractions administered to Trypanosoma brucei brucei infected Wistar rats.

 

4.      The haematological profile of Trypanosoma brucei brucei infected Wistar rats, before and after administration of crude extract and fractions.




Click “DOWNLOAD NOW” below to get the complete Projects

FOR QUICK HELP CHAT WITH US NOW!

+(234) 0814 780 1594

Buyers has the right to create dispute within seven (7) days of purchase for 100% refund request when you experience issue with the file received. 

Dispute can only be created when you receive a corrupt file, a wrong file or irregularities in the table of contents and content of the file you received. 

ProjectShelve.com shall either provide the appropriate file within 48hrs or send refund excluding your bank transaction charges. Term and Conditions are applied.

Buyers are expected to confirm that the material you are paying for is available on our website ProjectShelve.com and you have selected the right material, you have also gone through the preliminary pages and it interests you before payment. DO NOT MAKE BANK PAYMENT IF YOUR TOPIC IS NOT ON THE WEBSITE.

In case of payment for a material not available on ProjectShelve.com, the management of ProjectShelve.com has the right to keep your money until you send a topic that is available on our website within 48 hours.

You cannot change topic after receiving material of the topic you ordered and paid for.

Ratings & Reviews

0.0

No Review Found.

Review


To Comment


Sold By

ProjectShelve

7671

Total Item

Reviews (5)

  • Anonymous

    7 minutes ago

    This study was designed to assess genetic diversity of TLR7 gene and its expression profile in the Nigerian indigenous chickens and ISA Brown layer chicken. The study population comprises eight (8) groups (naked neck, normal and frizzled-feathered Nigerian indigenous chickens in rain forest and Guinea Savannah regions respectively, Fulani ecotype chicken and ISA Brown layer chicken). Five (5) blood samples were collected from each chicken group. Genomic DNA was isolated from each blood sample using the Zymo Quick-gDNATM Miniprep kit. The DNA sequencing of chTLR7 gene was done using the Sanger Sequencing Chemistry. Tissues from the thymus and the liver were aseptically collected from Two (2) clinically healthy chickens from each chicken group and were immediately transferred into separate 1.5 ml Eppendorf tubes containing 1 ml of RNALater solution. Total RNA was isolated using ISOLATE II RNA Mini kit. Complementary DNA (cDNA) was synthesized using SensiFASTTM cDNA synthesis kit. The expression of chTLR7 RNA was determined by qPCR assay; β-actin was used as the reference gene. 26 SNPs, two deletions and two insertions in the intronic region of TLR7 gene in the Nigerian indigenous chicken population and ISA Brown commercial layer chicken were found. Haplotype analysis revealed 13 haplotypes out of which nine (9) were unique to the Nigerian indigenous chickens; three (3) haplotypes were shared between ISA Brown layer chicken and the Nigerian indigenous chickens, while one (1) haplotype was unique to the Red jungle fowl. Nucleotide diversity estimates ranged from 0 to 0.019, which were close to zero and suggest that the chicken populations were not genetically differentiated at TLR7 locus. Estimates of gene flow ranged from -0.096 to 0.400 and were close to zero. Genetic distance estimates ranged from 0.007 to 0.054 and were close to zero, which suggests that the chickens have a close ancestor. The estimates of nearest-neighbour statistic ranged from 0.227 to 0.714, which showed that the chicken populations were part of the same panmictic population, hence were not genetically differentiated (P>0.05) at the TLR7 locus. Phylogenetic analysis of TLR7 gene sequences of the genetic groups and the Red jungle fowl revealed very close relationship at the TLR7 locus, which suggests that the TLR7 locus is highly conserved. TLR7 expression in the liver and thymus was significantly different (P<0.01) among the eight chicken groups; the Nigerian indigenous chickens expressed more TLR7 gene than ISA Brown layer chicken. Rain forest naked neck chicken had significantly (P<0.01) highest TLR7 expression of 2.07±0.07 fold. However, expression of TLR7 gene in the liver of rain forest frizzle-feathered and normal chicken, Guinea savannah naked neck, frizzle-feathered and normal chicken, and Fulani ecotype chicken were similar (P>0.05). Gene expression analysis of TLR7 RNA suggests that the Nigerian indigenous chickens could have comparatively more antiviral immune response than ISA Brown commercial layer chicken, hence could be used to develop chickens lines with good antiviral response. Polymorphisms observed at TLR7 gene in the Nigerian indigenous chickens could be used in marker-assisted selection to produce chicken lines with good antiviral response. TABLE OF CONTENTS Cover Page i Declaration ii Certification iii Dedication iv Acknowledgement v Table of Contents vi List of Tables x List of figures xi List of Plates xii Abstract xiii CHAPTER 1: INTRODUCTION 1 1.1 Background Information on the Nigerian Indigenous Chickens 1 1.2 Brief Background on the ISA Brown Commercial Layer Chicken 4 1.3 Toll-like Receptor Seven (TLR7) Gene 5 1.4 Statement of Problem 7 1.5 Objectives of the Study 8 1.6 Justification 8 CHAPTER 2: LITERATURE REVIEW 10 2.1 Origin of the Domestic Chicken 10 2.2 Genetic Diversity of the Domestic Chicken 10 2.3 Assessment of Genetic Diversity within and Between Chicken Populations 11 2.4 Genetic Markers for Assessing Genetic Diversity 12 2.4.1 Random amplified polymorphic DNA (RAPD) markers 13 2.4.2 Restricted fragment-length polymorphism (RFLP) markers 14 2.4.3 Amplified fragment length polymorphism (AFLP) 15 2.4.4 Microsatellites 15 2.4.5 Mitochondrial DNA D-loop 16 2.4.6 Single nucleotide polymorphism (SNP) 16 2.4.6.1 Single nucleotide polymorphisms (SNPs) analyses in different chicken populations 18 2.5 Ecology and Genetic Profile of the Nigerian Indigenous Chicken Populations 21 2.6 Phenotypic Characteristics of the Nigerian Indigenous Chickens 22 2.7 Genetic Analysis of the Nigerian Indigenous Chickens Using Physiological and Biochemical Markers 30 2.8 Molecular (DNA-based) Analyses of the Nigerian Indigenous Chickens 35 2.8.1 Molecular genetic analyses of the Nigerian indigenous chickens using microsatellite markers 36 2.8.2 Molecular genetic analyses of the Nigerian indigenous chickens at mitochondrial DNA D-loop region 37 2.8.3 Molecular genetics analyses of the Nigerian indigenous chickens using single nucleotide polymorphism (SNP) markers 38 2.9 Toll-like Receptors (TLRS) 39 2.9.1 The chicken toll-like receptor repertoire 40 2.9.2 Molecular structure of the chicken TLRs 41 2.9.3 The chicken toll-like receptor genes and their roles in pathogen recognition 42 2.9.4 Molecular variants of TLR genes in avian species 44 2.9.5 The chicken toll-like receptor 7 (chTLR7) gene and its expression profile 47 2.9.6 Polymorphisms of chTLR7, and its association with viral diseases 50 CHAPTER 3: MATERIALS AND METHODS 54 3.1 Experimental Populations 54 3.2 Blood Sample Collection 55 3.3 Laboratory Analysis 55 3.4 Experiment 1: Analysis of Genetic Diversity at TLR7 Gene in the Nigerian Indigenous Chicken Populations and ISA Brown Commercial Layer Chicken Using DNA Sequencing 55 3.4.1 DNA extraction and protocol 55 3.4.2 DNA quantification and integrity 56 3.4.3 Polymerase chain reaction (PCR) and primers 56 3.4.4 Preparation of agarose gel 57 3.4.5 Electrophoresis of PCR products 57 3.4.6 Visualization of PCR products (amplicons) 58 3.4.7 Cleaning of amplicons 58 3.4.8 Agarose gel electrophoresis of cleaned amplicons 59 3.4.9 Sequencing of PCR products 59 3.4.10 Alignment and editing of sequences 59 3.4.11 Single nucleotide polymorphism (SNP) identification and estimation of genetic diversity indices 59 3.4.12 Genetic distance estimation 60 3.4.13 Phylogenetic analysis 60 3.5 Experiment 2: Assessment of Evolutionary Relationship of TLR7 Gene in the Nigerian Indigenous Chickens, ISA Brown Layer Chicken and TLR7 Gene Sequences from Other Poultry Species in Genebank 60 3.5.1 Retrieval of DNA sequences from NCBI database 60 3.5.2 Multiple sequence alignment 61 3.5.3 Genetic distance estimation 61 3.5.4 Phylogenetic analysis 61 3.6 Experiment 3: Gene Expression Profile of TLR7 in Lymphoid Tissues of the Nigerian Indigenous Chickens and ISA Brown Commercial Layer Chicken 61 3.6.1 Experimental birds and management 61 3.6.2 Tissue collection 62 3.6.3 RNA extraction 62 3.6.4 RNA quantification and integrity 63 3.6.5 Complementary DNA (cDNA) synthesis 64 3.6.6 Real-Time Polymerase Chain Reaction (qPCR) 64 3.6.7 Assembling of qPCR data and statistical analysis 65 CHAPTER 4: RESULTS AND DISCUSSION 66 4.1 PCR Optimization of chTLR7 Gene 66 4.2 Genetic Diversity at TLR7 Gene of Nigerian Indigenous Chickens and ISA Brown Commercial Layer Chicken 66 4.2.1 Single nucleotide polymorphisms (SNPs) and INDELs of TLR7 gene in the Nigerian indigenous chickens and ISA brown commercial layer chickens 66 4.2.2 TLR7 haplotype variations, nucleotide diversity, genetic differentiation and nearest-neighbour statistic 75 4.2.3 Genetic distance and relationship of TLR7 gene sequences in Nigerian indigenous chickens and ISA brown layer chicken 83 4.2.4 Phylogenetic analysis of TLR7 gene in Nigerian indigenous chicken populations and ISA brown commercial layer chicken 88 4.3 Evolutionary Relationship of TLR7 Gene in Nigerian Indigenous Chickens, ISA Brown Commercial Layer Chicken and TLR7 Gene Sequence from Other Poultry Species in Genebank 90 4.4 Expression Profile of TLR7 RNA in Lymphoid Tissues of the Nigerian Indigenous Chickens and ISA Brown Commercial Layer Chicken 94 CHAPTER 5: CONCLUSION AND RECOMMENDATIONS 98 5.1 Conclusion 98 5.2 Recommendations 99 References 100 Appendices 117

  • Anonymous

    2 days ago

    I am thoroughly impressed with Projectshelve.com! The project material was of outstanding quality, well-researched, and highly detailed. What amazed me most was their instant delivery to both my email and WhatsApp, ensuring I got what I needed immediately. Highly reliable and professional—I'll definitely recommend them to anyone seeking quality project materials!

  • Anonymous

    1 week ago

    Its amazing transacting with Projectshelve. They are sincere, got material delivered within few minutes in my email and whatsApp.

  • TJ

    1 week ago

    Reliable source and good quality works

  • TJ

    2 months ago

    ProjectShelve is highly reliable. Got the project delivered instantly after payment. Quality of the work.also excellent. Thank you